nTorrent - A graphical user interface client to rtorrent (a cli torrent client) written in java. nTorrent can administer a rtorrent process over a network connection. Take a look at the project website for more info.

The GenoViz project provides tools for genomics data visualization. It consists of the following: 1) the GenoViz SDK, a library of re-usable components, 2) the Genometry data model to represent relationships between biological sequences, and 3) the Integrated Genome Browser (IGB, "igbee"), an application built upon the GenoViz SDK and Genometry for visualization and exploration of genomes and corresponding annotations from multiple data sources. IGB supports the Distributed Annotation System (DAS) protocol, version 1 and 2, as well as other optimized binary data formats that are designed for efficient exploration of large, whole genome data sets....

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FarCry Core is a cutting edge ColdFusion web application framework that blends the very best of open source development with commercial backing and support.

MxUpdate is a deployment tool for the Enovia PLM platform to handle administration objects as single update files.

Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.

Apache Pivot™ is an open-source platform for building installable Internet applications (IIAs). It combines the enhanced productivity and usability features of a modern user interface toolkit with the robustness of the Java platform.

Pivot allows developers to easily construct visually-engaging, cross-platform, connected applications in Java or any other JVM language, such as JavaScript, Groovy, or Scala. Pivot is also the only truly open IIA framework: it is completely open source, and is driven entirely by the software development community....

A flexible metadata database that utilizes XML as a common syntax for representing the large number of metadata content standards relevant to ecology. Thus, Metacat is a generic XML database that allows storage, query, and retrieval of arbitrary XML documents without prior knowledge of the XML schema....

Redstone XML-RPC Java Library is a small but versatile implementation of the XML-RPC specification.

QueryObjectFactory (QOF) is a lightweight runtime JDBC byte-code generator providing support for CRUD (create, retrieve, update and delete) operations and stored procedure calls. It uses Java annotations to define mappings and is fully OSGi ready.